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ERX4262166: Illumina HiSeq 4000 sequencing; qiita_ptid_7603:11442.G79474
1 ILLUMINA (Illumina HiSeq 4000) run: 13,133 spots, 2M bases, 878,282b downloads

Design: food microbiome
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: Global FoodOmics Project
show Abstracthide Abstract
We've all heard the old adage you are what you eat-but, do we know what we eat? There is much we don't yet know about the precise composition of the foods we eat; for example, which different molecules and microbes are found in or on different foods? How does the manner in which you prepare the foods change the molecules that are present? How much do organic foods differ from all natural or conventionally grown foods? The Global FoodOmics project will address these questions, and many more. The Global FoodOmics project will characterize the molecules and microbes present on a diverse set of foods and beverage- from fruits, vegetables, spices, to complex foods, exotic animal feed, pet food and more. Other categories that will be represented are fermented foods such as yogurt, pickled vegetables and beverages including beer, wine, kombucha as well as sodas and juices.
Sample: 11442.G79474
SAMEA7034374 • ERS4798572 • All experiments • All runs
Organism: food metagenome
Library:
Name: 11442.G79474
Instrument: Illumina HiSeq 4000
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4
Experiment attributes: (show all 29 attributes...) (hide...)
barcode: AACCGCATAAGT
center_name: UCSDMI
center_project_name: Julia GF
extraction_robot: Carmen_HOWE_KF2
extractionkit_lot: 157022405
linker: GT
mastermix_lot: 443912
orig_name: 79474
pcr_primers: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT
plating: LDG
primer: GTGTGYCAGCMGCCGCGGTAA
primer_date: 110217
primer_plate: 3
processing_robot: RIKE
project_name: Julia Global Food Project
run_center: UCSDMI
run_date: 8/23/19
run_prefix: Undetermined_S0_L001
runid: 190823_K00180_0886_AH7HHLBBXY_RKL_0024_Global_Food (show full text...)(hide...)
190823_K00180_0886_AH7HHLBBXY_RKL_0024_Global_Food_Mayo_Stability_Gerwick_Spikein
sample_plate: Julia_Global_Food_Project_Plate_3
sequencing_meth: Sequencing by synthesis
target_gene: 16S rRNA
target_subfragment: V4
tm1000_8_tool: 311172B
tm300_8_tool: 311318B
tm50_8_tool: 311426B
water_lot: RNBF9925
well_description: Julia_Global_Food_Project_Plate_3_79474_C8
well_id: C8
Runs: 1 run, 13,133 spots, 2M bases, 878,282b
Run# of Spots# of BasesSizePublished
ERR431359513,1332M878,282b2020-07-03

ID:
11278141

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